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- G
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O. Gotoh,
An improved algorithm for matching biological sequences.
Journal of Molecular Biology 162 (1982) 705-708.
- GM
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F. Gouvêa and B. Mazur, On the characteristic series of the U
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J. Hein, An algorithm for statistical alignment of
sequences related by a binary tree. Preprint.
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Hein, J, C. Wiuf, B. Knudsen, M. B. Møller, and G. Wibling,
``Statistical alignment: computational properties, homology testing and
goodness-of-fit.'' J. Mol. Biol. 302:265-279 (2000).
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L. J. P. Kilford, Slopes of overconvergent modular forms.
Ph. D. thesis. Imperial College of Science, Technology and Medicine,
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C. Lee, C. Grasso, M. Sharlow,
Multiple sequence alignment using partial order graphs.
Bioinformatics 18 (2002) 452-464.
- L+
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Lunter, G. A., I. Miklós, Y. S. Song, and J. Hein, ``An efficient
algorithm for statistical multiple
alignment on arbitrary phylogenetic trees.'' Preprint (April 2003).
- NHH
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C. Notredame, D. G. Higgins, and J. Heringa,
T-coffee: a novel method for fast and accurate multiple sequence
alignment. Journal of Molecular Biology 302 (2000) 205-217.
- SN
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N. Saitou and M. Nei,
The neighbor-joining method: a new method for
reconstructing phylogenetic trees.
Molecular Biology and Evolution 4 (1987) 406-425.
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T. F. Smith and M. S. Waterman,
Identification of common molecular subsequences.
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L. M. Smithline, Exploring slopes of
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Ph. D. thesis. University of California, Berkeley (2000).
- Sm2
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--, Compact operators with rational generation. Proceedings of
the Canadian Number Theory Association VII, Montreal (to appear).
- Sm3
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--, Bounding slopes of
-adic modular forms. Submitted.
- Sm4
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--, Computing lowest slopes of
-adic modular forms. Submitted.
- Sm5
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--. Probabilistic pairwise sequence alignment. Preprint.
- TKF
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J. L. Thorne, H. Kishino, and J. Felsenstein,
An evolutionary model for maximum likelihood alignment
of DNA sequences. Journal of Molecular Evolution 33 (1991) 114-124.
Lawren Smithline
2003-11-29