We prove a decomposition theorem for the quantum cohomology of variations of GIT quotients. More precisely, for any reductive group $G$ and a simple $G$-VGIT wall-crossing $X_- \dashrightarrow X_+$ with a wall $S$, we show that the quantum $D$-module of $X_-$ can be decomposed into a direct sum of that of $X_+$ and copies of that of $S$. As an application, we obtain a decomposition theorem for the quantum cohomology of local models of standard flips in birational geometry.